R version 2.8.1 (2008-12-22) Copyright (C) 2008 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Rはフリーソフトウェアであり、「完全に無保証」です。 一定の条件に従えば、自由にこれを再配布することができます。 配布条件の詳細に関しては、'license()'あるいは'licence()'と入力してください。 Rは多くの貢献者による共同プロジェクトです。 詳しくは'contributors()'と入力してください。 また、RやRのパッケージを出版物で引用する際の形式については 'citation()'と入力してください。 'demo()'と入力すればデモをみることができます。 'help()'とすればオンラインヘルプが出ます。 'help.start()'でHTMLブラウザによるヘルプがみられます。 'q()'と入力すればRを終了します。 > options(STERM='iESS', editor='emacs') > install.packages("tm") install.packages("tm") 中で警告がありました： 引数 'lib' が欠けています：/home/ishida/Rlibs を使います --- このセッションで使うために、CRANのミラーサイトを選んでください --- CRAN mirror 1: Argentina 2: Australia 3: Austria 4: Belgium 5: Brazil (PR) 6: Brazil (RJ) 7: Brazil (SP 1) 8: Brazil (SP 2) 9: Canada (BC) 10: Canada (ON) 11: Chile 12: China 13: Croatia 14: Denmark 15: France (Toulouse) 16: France (Lyon) 17: France (Paris) 18: Germany (Goettingen) 19: Germany (Muenchen) 20: Iran 21: Ireland 22: Italy (Milano) 23: Italy (Padua) 24: Italy (Palermo) 25: Japan (Aizu) 26: Japan (Tokyo) 27: Japan (Tsukuba) 28: Korea 29: Mexico 30: Netherlands (Amsterdam 2) 31: Netherlands (Utrecht) 32: New Zealand 33: Norway 34: Poland (Oswiecim) 35: Poland (Wroclaw) 36: Portugal 37: Russia 38: Singapore 1 39: Singapore 2 40: Slovenia (Ljubljana) 41: South Africa 42: Spain (Madrid) 43: Sweden 44: Switzerland 45: Taiwan (Taichung) 46: Taiwan (Taipeh) 47: Thailand 48: Turkey 49: UK (Bristol) 50: USA (CA 1) 51: USA (CA 2) 52: USA (IA) 53: USA (MI) 54: USA (MO) 55: USA (NC) 56: USA (OH) 57: USA (PA 1) 58: USA (PA 2) 59: USA (TX 1) 60: USA (TX 2) 61: USA (WA) 選択： 27 also installing the dependencies ‘rJava’, ‘RWeka’, ‘filehash’, ‘Matrix’, ‘Snowball’, ‘XML’, ‘proxy’ URL 'http://cran.md.tsukuba.ac.jp/src/contrib/rJava_0.6-2.tar.gz' を試しています Content type 'application/x-gzip' length 237115 bytes (231 Kb) 開かれた URL ================================================== downloaded 231 Kb URL 'http://cran.md.tsukuba.ac.jp/src/contrib/RWeka_0.3-15.tar.gz' を試しています Content type 'application/x-gzip' length 4589166 bytes (4.4 Mb) 開かれた URL ================================================== downloaded 4.4 Mb URL 'http://cran.md.tsukuba.ac.jp/src/contrib/filehash_2.0-1.tar.gz' を試しています Content type 'application/x-gzip' length 134994 bytes (131 Kb) 開かれた URL ================================================== downloaded 131 Kb URL 'http://cran.md.tsukuba.ac.jp/src/contrib/Matrix_0.999375-20.tar.gz' を試しています Content type 'application/x-gzip' length 1954872 bytes (1.9 Mb) 開かれた URL ================================================== downloaded 1.9 Mb URL 'http://cran.md.tsukuba.ac.jp/src/contrib/Snowball_0.0-3.tar.gz' を試しています Content type 'application/x-gzip' length 240034 bytes (234 Kb) 開かれた URL ================================================== downloaded 234 Kb URL 'http://cran.md.tsukuba.ac.jp/src/contrib/XML_1.99-0.tar.gz' を試しています Content type 'application/x-gzip' length 650839 bytes (635 Kb) 開かれた URL ================================================== downloaded 635 Kb URL 'http://cran.md.tsukuba.ac.jp/src/contrib/proxy_0.4-1.tar.gz' を試しています Content type 'application/x-gzip' length 35052 bytes (34 Kb) 開かれた URL ================================================== downloaded 34 Kb URL 'http://cran.md.tsukuba.ac.jp/src/contrib/tm_0.3-3.tar.gz' を試しています Content type 'application/x-gzip' length 574378 bytes (560 Kb) 開かれた URL ================================================== downloaded 560 Kb * Installing *source* package 'rJava' ... checking for gcc... gcc -std=gnu99 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -std=gnu99 accepts -g... yes checking for gcc -std=gnu99 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -std=gnu99 -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking whether time.h and sys/time.h may both be included... yes configure: checking whether gcc -std=gnu99 supports static inline... yes checking Java support in R... present: interpreter : '/usr/bin/java' archiver : '/usr/bin/jar' compiler : '/usr/bin/javac' header prep.: '/usr/bin/javah' cpp flags : '-I/usr/lib/jvm/java-6-sun-1.6.0.10/jre/../include -I/usr/lib/jvm/java-6-sun-1.6.0.10/jre/../include/linux' java libs : '-L/usr/lib/jvm/java-6-sun-1.6.0.10/jre/lib/i386/server -L/usr/lib/jvm/java-6-sun-1.6.0.10/jre/lib/i386 -L/usr/lib/jvm/java-6-sun-1.6.0.10/jre/../lib/i386 -L/usr/local/lib -L/usr/java/packages/lib/i386 -L/lib -L/usr/lib -ljvm' checking whether JNI programs can be compiled... yes checking JNI data types... ok checking whether JRI should be compiled (autodetect)... no checking whether debugging output should be enabled... no checking whether memory profiling is desired... no checking whether threads support is requested... no checking whether callbacks support is requested... no checking whether JNI cache support is requested... no checking whether JRI is requested... no configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/zzz.R config.status: creating src/config.h ** libs gcc -std=gnu99 -I/usr/local/lib/R/include -I. -I/usr/lib/jvm/java-6-sun-1.6.0.10/jre/../include -I/usr/lib/jvm/java-6-sun-1.6.0.10/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c Rglue.c -o Rglue.o gcc -std=gnu99 -I/usr/local/lib/R/include -I. -I/usr/lib/jvm/java-6-sun-1.6.0.10/jre/../include -I/usr/lib/jvm/java-6-sun-1.6.0.10/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c arrayc.c -o arrayc.o gcc -std=gnu99 -I/usr/local/lib/R/include -I. -I/usr/lib/jvm/java-6-sun-1.6.0.10/jre/../include -I/usr/lib/jvm/java-6-sun-1.6.0.10/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c callJNI.c -o callJNI.o gcc -std=gnu99 -I/usr/local/lib/R/include -I. -I/usr/lib/jvm/java-6-sun-1.6.0.10/jre/../include -I/usr/lib/jvm/java-6-sun-1.6.0.10/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c callback.c -o callback.o gcc -std=gnu99 -I/usr/local/lib/R/include -I. -I/usr/lib/jvm/java-6-sun-1.6.0.10/jre/../include -I/usr/lib/jvm/java-6-sun-1.6.0.10/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c fields.c -o fields.o gcc -std=gnu99 -I/usr/local/lib/R/include -I. -I/usr/lib/jvm/java-6-sun-1.6.0.10/jre/../include -I/usr/lib/jvm/java-6-sun-1.6.0.10/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -std=gnu99 -I/usr/local/lib/R/include -I. -I/usr/lib/jvm/java-6-sun-1.6.0.10/jre/../include -I/usr/lib/jvm/java-6-sun-1.6.0.10/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c jri_glue.c -o jri_glue.o gcc -std=gnu99 -I/usr/local/lib/R/include -I. -I/usr/lib/jvm/java-6-sun-1.6.0.10/jre/../include -I/usr/lib/jvm/java-6-sun-1.6.0.10/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c loader.c -o loader.o gcc -std=gnu99 -I/usr/local/lib/R/include -I. -I/usr/lib/jvm/java-6-sun-1.6.0.10/jre/../include -I/usr/lib/jvm/java-6-sun-1.6.0.10/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c rJava.c -o rJava.o gcc -std=gnu99 -I/usr/local/lib/R/include -I. -I/usr/lib/jvm/java-6-sun-1.6.0.10/jre/../include -I/usr/lib/jvm/java-6-sun-1.6.0.10/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c tools.c -o tools.o gcc -std=gnu99 -shared -L/usr/local/lib -o rJava.so Rglue.o arrayc.o callJNI.o callback.o fields.o init.o jri_glue.o loader.o rJava.o tools.o -L/usr/lib/jvm/java-6-sun-1.6.0.10/jre/lib/i386/server -L/usr/lib/jvm/java-6-sun-1.6.0.10/jre/lib/i386 -L/usr/lib/jvm/java-6-sun-1.6.0.10/jre/../lib/i386 -L/usr/local/lib -L/usr/java/packages/lib/i386 -L/lib -L/usr/lib -ljvm ** R ** inst ** preparing package for lazy loading ** help >>> Building/Updating help pages for package 'rJava' Formats: text html latex example accessOp text html latex example jarray text html latex example jarrayRef-class text html latex jcall text html latex example jcast text html latex example jcastToArray text html latex example jcheck text html latex example jengine text html latex example jequals text html latex example jfield text html latex example jfloat-class text html latex jfloat text html latex jinit text html latex example jmemprof text html latex example jnew text html latex example jnull text html latex example jobjRef-class text html latex jpackage text html latex example jreflection text html latex example jserialize text html latex jsimplify text html latex example loader text html latex example show text html latex ** building package indices ... * DONE (rJava) * Installing *source* package 'filehash' ... ** libs gcc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/include -fpic -g -O2 -c hash.c -o hash.o gcc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/include -fpic -g -O2 -c lockfile.c -o lockfile.o gcc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/include -fpic -g -O2 -c readKeyMap.c -o readKeyMap.o gcc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/include -fpic -g -O2 -c sha1.c -o sha1.o gcc -std=gnu99 -shared -L/usr/local/lib -o filehash.so hash.o lockfile.o readKeyMap.o sha1.o ** R ** inst ** preparing package for lazy loading Restoring the implicit generic function for "with" from package "base" into package "filehash"; the generic differs from the default conversion (Signatures differ: (data, expr), (data)) ** help >>> Building/Updating help pages for package 'filehash' Formats: text html latex example createQ text html latex createS text html latex db2env text html latex example dbInit text html latex dump text html latex example filehash-class text html latex example filehashFormats text html latex filehashOption text html latex push text html latex queue-class text html latex example stack-class text html latex example ** building package indices ... * DONE (filehash) * Installing *source* package 'Matrix' ... ** libs gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c CHMfactor.c -o CHMfactor.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c Csparse.c -o Csparse.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c TMatrix_as.c -o TMatrix_as.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c Tsparse.c -o Tsparse.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c Mutils.c -o Mutils.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c chm_common.c -o chm_common.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c cs.c -o cs.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c cs_utils.c -o cs_utils.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c dense.c -o dense.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c dgCMatrix.c -o dgCMatrix.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c dgTMatrix.c -o dgTMatrix.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c dgeMatrix.c -o dgeMatrix.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c dpoMatrix.c -o dpoMatrix.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c dppMatrix.c -o dppMatrix.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c dsCMatrix.c -o dsCMatrix.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c dsyMatrix.c -o dsyMatrix.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c dspMatrix.c -o dspMatrix.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c dtCMatrix.c -o dtCMatrix.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c dtTMatrix.c -o dtTMatrix.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c dtrMatrix.c -o dtrMatrix.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c dtpMatrix.c -o dtpMatrix.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c factorizations.c -o factorizations.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c ldense.c -o ldense.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c lgCMatrix.c -o lgCMatrix.o gcc -std=gnu99 -I/usr/local/lib/R/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c sparseQR.c -o sparseQR.o make[1]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/SPQR' に入ります ( cd Lib ; make clean ) make[2]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/SPQR/Lib' に入ります make[2]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/SPQR/Lib' から出ます make[1]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/SPQR' から出ます make[1]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/CHOLMOD' に入ります ( cd Lib ; make clean ) make[2]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/CHOLMOD/Lib' に入ります make[2]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/CHOLMOD/Lib' から出ます make[1]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/CHOLMOD' から出ます make[1]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/COLAMD' に入ります ( cd Source ; make clean ) make[2]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/COLAMD/Source' に入ります make[2]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/COLAMD/Source' から出ます make[1]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/COLAMD' から出ます make[1]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/AMD' に入ります ( cd Source ; make clean ) make[2]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/AMD/Source' に入ります make[2]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/AMD/Source' から出ます make[1]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/AMD' から出ます make[1]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/SPQR' に入ります ( cd Lib ; make lib ) make[2]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/SPQR/Lib' に入ります g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_rmap.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/SuiteSparseQR_C.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/SuiteSparseQR_expert.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_parallel.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_kernel.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_analyze.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_assemble.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_cpack.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_csize.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_fcsize.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_debug.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_front.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_factorize.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_freenum.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_freesym.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_freefac.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_fsize.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_maxcolnorm.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_rconvert.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_rcount.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_rhpack.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_rsolve.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_stranspose1.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_stranspose2.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_hpinv.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_1fixed.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_1colamd.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/SuiteSparseQR.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_1factor.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_cumsum.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_shift.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_happly.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_panel.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_happly_work.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/SuiteSparseQR_qmult.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_trapezoidal.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_larftb.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_append.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_type.cpp g++ -I/usr/local/lib/R/include -I../../UFconfig -I../../CHOLMOD/Include -I../Include -DNPARTITION -I/usr/local/include -fpic -g -O2 -c ../Source/spqr_tol.cpp ar -rucs ../../SPQR.a spqr_rmap.o SuiteSparseQR_C.o SuiteSparseQR_expert.o spqr_parallel.o spqr_kernel.o spqr_analyze.o spqr_assemble.o spqr_cpack.o spqr_csize.o spqr_fcsize.o spqr_debug.o spqr_front.o spqr_factorize.o spqr_freenum.o spqr_freesym.o spqr_freefac.o spqr_fsize.o spqr_maxcolnorm.o spqr_rconvert.o spqr_rcount.o spqr_rhpack.o spqr_rsolve.o spqr_stranspose1.o spqr_stranspose2.o spqr_hpinv.o spqr_1fixed.o spqr_1colamd.o SuiteSparseQR.o spqr_1factor.o spqr_cumsum.o spqr_shift.o spqr_happly.o spqr_panel.o spqr_happly_work.o SuiteSparseQR_qmult.o spqr_trapezoidal.o spqr_larftb.o spqr_append.o spqr_type.o spqr_tol.o make[2]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/SPQR/Lib' から出ます make[1]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/SPQR' から出ます make[1]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/CHOLMOD' に入ります ( cd Lib ; make ) make[2]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/CHOLMOD/Lib' に入ります gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_aat.c -o cholmod_l_aat.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_add.c -o cholmod_l_add.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_band.c -o cholmod_l_band.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_common.c -o cholmod_l_common.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_complex.c -o cholmod_l_complex.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_copy.c -o cholmod_l_copy.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_dense.c -o cholmod_l_dense.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_error.c -o cholmod_l_error.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_factor.c -o cholmod_l_factor.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_memory.c -o cholmod_l_memory.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_sparse.c -o cholmod_l_sparse.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_transpose.c -o cholmod_l_transpose.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_triplet.c -o cholmod_l_triplet.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Check/cholmod_check.c -o cholmod_l_check.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Check/cholmod_read.c -o cholmod_l_read.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Check/cholmod_write.c -o cholmod_l_write.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Modify/cholmod_updown.c -o cholmod_l_updown.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../UFconfig -DNPARTITION -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o ar -rucs ../../CHOLMOD.a cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o make[2]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/CHOLMOD/Lib' から出ます make[1]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/CHOLMOD' から出ます make[1]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/COLAMD' に入ります ( cd Source ; make lib ) make[2]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/COLAMD/Source' に入ります gcc -std=gnu99 -I/usr/local/lib/R/include -I../Include -I../../UFconfig -I/usr/local/include -fpic -g -O2 -c colamd_global.c -o colamd_global.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../Include -I../../UFconfig -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c colamd.c -o colamd_l.o ar -rucs ../../COLAMD.a colamd_global.o colamd_l.o # colamd.o make[2]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/COLAMD/Source' から出ます make[1]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/COLAMD' から出ます make[1]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/AMD' に入ります ( cd Source ; make lib ) make[2]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/AMD/Source' に入ります gcc -std=gnu99 -I/usr/local/lib/R/include -I../Include -I../../UFconfig -I/usr/local/include -fpic -g -O2 -c amd_global.c -o amd_global.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../Include -I../../UFconfig -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_1.c -o amd_l_1.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../Include -I../../UFconfig -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_2.c -o amd_l_2.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../Include -I../../UFconfig -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../Include -I../../UFconfig -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_control.c -o amd_l_control.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../Include -I../../UFconfig -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../Include -I../../UFconfig -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../Include -I../../UFconfig -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_info.c -o amd_l_info.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../Include -I../../UFconfig -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_order.c -o amd_l_order.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../Include -I../../UFconfig -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../Include -I../../UFconfig -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../Include -I../../UFconfig -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o gcc -std=gnu99 -I/usr/local/lib/R/include -I../Include -I../../UFconfig -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o ar -rucs ../../AMD.a amd_global.o amd_l_1.o amd_l_2.o amd_l_aat.o amd_l_control.o amd_l_defaults.o amd_l_dump.o amd_l_info.o amd_l_order.o amd_l_post_tree.o amd_l_postorder.o amd_l_preprocess.o amd_l_valid.o # amd_i_1.o amd_i_2.o amd_i_aat.o amd_i_control.o amd_i_defaults.o amd_i_dump.o amd_i_info.o amd_i_order.o amd_i_post_tree.o amd_i_postorder.o amd_i_preprocess.o amd_i_valid.o make[2]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/AMD/Source' から出ます make[1]: ディレクトリ `/tmp/R.INSTALL.f11852/Matrix/src/AMD' から出ます g++ -shared -L/usr/local/lib -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o SPQR.a CHOLMOD.a COLAMD.a AMD.a -L/usr/local/lib/R/lib -lRlapack -L/usr/local/lib/R/lib -lRblas -lgfortran -lm ** R ** data ** inst ** preparing package for lazy loading Loading required package: lattice Creating a generic for "rcond" in package "Matrix" (the supplied definition differs from and overrides the implicit generic in package "base": Formal arguments differ: (x, norm, ...), (x, norm, triangular, ...)) Creating a generic for "colSums" in package "Matrix" (the supplied definition differs from and overrides the implicit generic in package "base": Formal arguments differ: (x, na.rm, dims, ...), (x, na.rm, dims)) Creating a generic for "colMeans" in package "Matrix" (the supplied definition differs from and overrides the implicit generic in package "base": Formal arguments differ: (x, na.rm, dims, ...), (x, na.rm, dims)) Creating a generic for "rowSums" in package "Matrix" (the supplied definition differs from and overrides the implicit generic in package "base": Formal arguments differ: (x, na.rm, dims, ...), (x, na.rm, dims)) Creating a generic for "rowMeans" in package "Matrix" (the supplied definition differs from and overrides the implicit generic in package "base": Formal arguments differ: (x, na.rm, dims, ...), (x, na.rm, dims)) Creating a new generic function for "image" in "Matrix" Creating a new generic function for "solve" in "Matrix" Creating a new generic function for "determinant" in "Matrix" Creating a new generic function for "update" in "Matrix" Creating a new generic function for "crossprod" in "Matrix" Creating a new generic function for "tcrossprod" in "Matrix" Creating a new generic function for "t" in "Matrix" Creating a new generic function for "diag" in "Matrix" Creating a new generic function for "as.matrix" in "Matrix" Creating a new generic function for "as.array" in "Matrix" Creating a new generic function for "head" in "Matrix" Creating a new generic function for "tail" in "Matrix" Creating a new generic function for "drop" in "Matrix" Creating a new generic function for "as.vector" in "Matrix" Creating a new generic function for "mean" in "Matrix" Creating a new generic function for "cov2cor" in "Matrix" Creating a new generic function for "isSymmetric" in "Matrix" Creating a new generic function for "unname" in "Matrix" Creating a new generic function for "kronecker" in "Matrix" Creating a new generic function for "chol" in "Matrix" Creating a new generic function for "all.equal" in "Matrix" Creating a new generic function for "diff" in "Matrix" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "matrix.csr" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "matrix.csr" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "matrix.csc" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "matrix.csc" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "matrix.coo" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "matrix.coo" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "matrix.csr" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "matrix.csr" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "matrix.coo" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "matrix.csr" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "matrix.csc" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "matrix.coo" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "matrix.csr" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "matrix.coo" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "matrix.csc" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "matrix.csr" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "matrix.csr" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "matrix.coo" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "matrix.csc" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "matrix.csr" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "matrix.coo" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "matrix.csc" Warning in matchSignature(signature, fdef, where) : in the method signature for function "colSums" no definition for class: "igCMatrix" Warning in matchSignature(signature, fdef, where) : in the method signature for function "rowSums" no definition for class: "igCMatrix" Warning in matchSignature(signature, fdef, where) : in the method signature for function "colMeans" no definition for class: "igCMatrix" Warning in matchSignature(signature, fdef, where) : in the method signature for function "rowMeans" no definition for class: "igCMatrix" Creating a new generic function for "zapsmall" in "Matrix" Creating a new generic function for "qr" in "Matrix" Creating a new generic function for "print" in "Matrix" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "graphAM" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "graph" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "graphNEL" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "graphNEL" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "graph" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "graphNEL" Warning in matchSignature(signature, fdef, where) : in the method signature for function "coerce" no definition for class: "graphNEL" Creating a new generic function for "summary" in "Matrix" Creating a new generic function for "qr.R" in "Matrix" Creating a new generic function for "qr.qy" in "Matrix" Creating a new generic function for "qr.qty" in "Matrix" Creating a new generic function for "qr.coef" in "Matrix" Creating a new generic function for "qr.resid" in "Matrix" Creating a new generic function for "qr.fitted" in "Matrix" ** help >>> Building/Updating help pages for package 'Matrix' Formats: text html latex example BunchKaufman-methods text html latex example CAex text html latex example CHMfactor-class text html latex example Cholesky-class text html latex example Cholesky text html latex example CsparseMatrix-class text html latex example Diagonal text html latex example Hilbert text html latex example KNex text html latex example LU-class text html latex example Matrix-class text html latex example Matrix text html latex example MatrixFactorization-class text html latex example RsparseMatrix-class text html latex example SPQR-class text html latex example Schur-class text html latex example Schur text html latex example SparseM-conv text html latex Subassign-methods text html latex example TsparseMatrix-class text html latex example USCounties text html latex example Xtrct-methods text html latex example all-methods text html latex example all.equal-methods text html latex example atomicVector-class text html latex example band text html latex example bdiag text html latex example cBind text html latex example chol text html latex example colSums text html latex example compMatrix-class text html latex dMatrix-class text html latex example ddenseMatrix-class text html latex example ddiMatrix-class text html latex example denseMatrix-class text html latex example dgCMatrix-class text html latex example dgRMatrix-class text html latex dgTMatrix-class text html latex example dgeMatrix-class text html latex diagonalMatrix-class text html latex example dpoMatrix-class text html latex example drop0 text html latex example dsCMatrix-class text html latex example dsRMatrix-class text html latex example dsparseMatrix-class text html latex example dsyMatrix-class text html latex example dtCMatrix-class text html latex example dtRMatrix-class-def text html latex example dtpMatrix-class text html latex example dtrMatrix-class text html latex example expand text html latex example expm text html latex example externalFormats text html latex example facmul text html latex example forceSymmetric text html latex example generalMatrix-class text html latex image-methods text html latex example index-class text html latex example is.na-methods text html latex example isSymmetric-methods text html latex kronecker-methods text html latex example ldenseMatrix-class text html latex example ldiMatrix-class text html latex example lgeMatrix-class text html latex example lsparseMatrix-classes text html latex example lsyMatrix-class text html latex example ltrMatrix-class text html latex example lu text html latex example nMatrix-class text html latex example ndenseMatrix-class text html latex example nearPD text html latex example ngeMatrix-class text html latex example nnzero text html latex example norm text html latex example nsparseMatrix-classes text html latex example nsyMatrix-class text html latex example ntrMatrix-class text html latex example number-class text html latex example pMatrix-class text html latex example printSpMatrix text html latex example qr-methods text html latex rcond text html latex example replValue-class text html latex example spMatrix text html latex example sparseLU-class text html latex example sparseMatrix-class text html latex example sparseMatrix text html latex example sparseQR-class text html latex example sparseVector-class text html latex example spqr text html latex example symmetricMatrix-class text html latex example symmpart text html latex example tcrossprod text html latex example triangularMatrix-class text html latex example unpack text html latex example unused-classes text html latex example xtabs text html latex example ** building package indices ... Loading required package: Matrix Loading required package: stats Loading required package: methods Loading required package: lattice Attaching package: 'Matrix' The following object(s) are masked from package:stats : xtabs The following object(s) are masked from package:base : colMeans, colSums, rcond, rowMeans, rowSums * DONE (Matrix) * Installing *source* package 'XML' ... checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking how to run the C preprocessor... gcc -E checking for sed... /bin/sed checking for xml2-config... /usr/bin/xml2-config USE_XML2 = yes SED_EXTENDED_ARG: -r Minor 6, Patch 32 for 2.6.32 Located parser file -I/usr/include/libxml2/parser.h Checking for 1.8: -I/usr/include/libxml2 Using libxml2.* checking for gzopen in -lz... yes checking for xmlParseFile in -lxml2... yes checking for xmlHashSize in -lxml2... yes Using built-in xmlHashSize Checking DTD parsing (presence of externalSubset)... checking for xmlHashSize in -lxml2... yes Found xmlHashSize checking for xmlOutputBufferCreateBuffer in -lxml2... yes have xmlOutputBufferCreateBuffer() checking for xmlDocDumpFormatMemoryEnc in -lxml2... yes checking libxml/xmlversion.h usability... yes checking libxml/xmlversion.h presence... yes checking for libxml/xmlversion.h... yes Expat: FALSE Checking for return type of xmlHashScan element routine. No return value for xmlHashScan xmlNs has a context field Checking for cetype_t enumeration Using recent version of R with cetype_t enumeration type for encoding **************************************** Configuration information: Libxml settings libxml include directory: -I/usr/include/libxml2 libxml library directory: -lxml2 -lz -lxml2 libxml 2: -DLIBXML2=1 Compilation flags: -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 Link flags: -lxml2 -lz -lxml2 **************************************** configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/supports.R config.status: creating inst/scripts/RSXML.csh config.status: creating inst/scripts/RSXML.bsh ** libs gcc -std=gnu99 -I/usr/local/lib/R/include -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c DocParse.c -o DocParse.o In file included from DocParse.c:13: Utils.h:166:2: warning: #warning "Redefining COPY_TO_USER_STRING to use encoding from XML parser" DocParse.c: In function ‘notifyError’: DocParse.c:1034: 警告: フォーマットは非文字列リテラルで、且つフォーマット引数を持ちません gcc -std=gnu99 -I/usr/local/lib/R/include -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c EventParse.c -o EventParse.o In file included from EventParse.c:15: Utils.h:166:2: warning: #warning "Redefining COPY_TO_USER_STRING to use encoding from XML parser" EventParse.c: In function ‘RS_XML_textHandler’: EventParse.c:416: 警告: キャストによってポインタから異なるサイズの整数となります gcc -std=gnu99 -I/usr/local/lib/R/include -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c ExpatParse.c -o ExpatParse.o gcc -std=gnu99 -I/usr/local/lib/R/include -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c HTMLParse.c -o HTMLParse.o gcc -std=gnu99 -I/usr/local/lib/R/include -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c RSDTD.c -o RSDTD.o gcc -std=gnu99 -I/usr/local/lib/R/include -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c RUtils.c -o RUtils.o gcc -std=gnu99 -I/usr/local/lib/R/include -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c Utils.c -o Utils.o gcc -std=gnu99 -I/usr/local/lib/R/include -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c XMLEventParse.c -o XMLEventParse.o In file included from XMLEventParse.c:5: Utils.h:166:2: warning: #warning "Redefining COPY_TO_USER_STRING to use encoding from XML parser" XMLEventParse.c: In function ‘R_processBranch’: XMLEventParse.c:342: 警告: initialization from incompatible pointer type gcc -std=gnu99 -I/usr/local/lib/R/include -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c XMLHashTree.c -o XMLHashTree.o gcc -std=gnu99 -I/usr/local/lib/R/include -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c XMLTree.c -o XMLTree.o In file included from XMLTree.c:40: Utils.h:166:2: warning: #warning "Redefining COPY_TO_USER_STRING to use encoding from XML parser" gcc -std=gnu99 -I/usr/local/lib/R/include -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c catalog.c -o catalog.o gcc -std=gnu99 -I/usr/local/lib/R/include -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c schema.c -o schema.o gcc -std=gnu99 -I/usr/local/lib/R/include -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -c xpath.c -o xpath.o gcc -std=gnu99 -shared -L/usr/local/lib -o XML.so DocParse.o EventParse.o ExpatParse.o HTMLParse.o RSDTD.o RUtils.o Utils.o XMLEventParse.o XMLHashTree.o XMLTree.o catalog.o schema.o xpath.o -lxml2 -lz -lxml2 ** R ** inst ** preparing package for lazy loading ** help >>> Building/Updating help pages for package 'XML' Formats: text html latex example AssignXMLNode text html latex example Doctype-class text html latex example Doctype text html latex example SAXMethods text html latex SAXState-class text html latex example XMLInternalDocument text html latex example XMLNode-class text html latex example addChildren text html latex example addNode text html latex example addSibling text html latex example append.XMLNode text html latex example asXMLNode text html latex example Note: removing empty section \examples in file 'asXMLTreeNode.Rd' asXMLTreeNode text html latex catalogResolve text html latex example catalogs text html latex example Note: removing empty section \usage in file 'coerce.Rd' coerce text html latex docName text html latex example dtdElement text html latex example dtdElementValidEntry text html latex example dtdIsAttribute text html latex example dtdValidElement text html latex example free text html latex example genericSAXHandlers text html latex example getNodeSet text html latex example Note: removing empty section \examples in file 'getRelativeURL.Rd' getRelativeURL text html latex getXMLErrors text html latex example length.XMLNode text html latex example libxmlVersion text html latex example names.XMLNode text html latex example newXMLDoc text html latex example Note: removing empty section \examples in file 'newXMLNamespace.Rd' newXMLNamespace text html latex parseDTD text html latex example parseURI text html latex example print text html latex example processXInclude text html latex example saveXML text html latex example schema-class text html latex supportsExpat text html latex example toHTML text html latex example toString text html latex example xmlApply text html latex example xmlAttributeType text html latex xmlAttrs text html latex example xmlChildren text html latex example xmlContainsEntity text html latex example xmlDOMApply text html latex example xmlElementSummary text html latex example xmlElementsByTagName text html latex example xmlEventHandler text html latex example xmlEventParse text html latex example xmlFlatListTree text html latex example xmlGetAttr text html latex example xmlHandler text html latex example xmlName text html latex example xmlNamespace text html latex example xmlNamespaceDefinitions text html latex example xmlNode text html latex example xmlOutput text html latex example xmlParent text html latex example Note: removing empty section \examples in file 'xmlParserContextFunction.Rd' xmlParserContextFunction text html latex xmlRoot text html latex example xmlSchemaValidate text html latex example xmlSize text html latex example xmlSource text html latex example xmlStopParser text html latex example xmlStructuredStop text html latex example xmlSubset text html latex example xmlToList text html latex example xmlTree text html latex example xmlTreeParse text html latex example xmlValue text html latex example ** building package indices ... * DONE (XML) * Installing *source* package 'proxy' ... ** libs gcc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/include -fpic -g -O2 -c apply.c -o apply.o gcc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/include -fpic -g -O2 -c distance.c -o distance.o gcc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/include -fpic -g -O2 -c util.c -o util.o gcc -std=gnu99 -shared -L/usr/local/lib -o proxy.so apply.o distance.o util.o ** R ** inst ** preparing package for lazy loading ** help >>> Building/Updating help pages for package 'proxy' Formats: text html latex example dist text html latex example registry text html latex example rowSums.dist text html latex example ** building package indices ... * DONE (proxy) * Installing *source* package 'RWeka' ... ** R ** inst ** preparing package for lazy loading Loading required package: rJava Loading required package: grid ** help >>> Building/Updating help pages for package 'RWeka' Formats: text html latex example WOW text html latex example Weka_associators text html latex example Weka_classifier_functions text html latex example Weka_classifier_lazy text html latex Weka_classifier_meta text html latex example Weka_classifier_rules text html latex example Weka_classifier_trees text html latex example Weka_classifiers text html latex Weka_clusterers text html latex example Weka_control text html latex example Weka_converters text html latex Weka_filters text html latex example Weka_interfaces text html latex example Weka_stemmers text html latex Weka_tokenizers text html latex dot text html latex evaluate_Weka_classifier text html latex example predict_Weka_classifier text html latex predict_Weka_clusterer text html latex read.arff text html latex example write.arff text html latex example ** building package indices ... * DONE (RWeka) * Installing *source* package 'Snowball' ... ** R ** inst ** preparing package for lazy loading Loading required package: RWeka Loading required package: rJava Loading required package: grid ** help >>> Building/Updating help pages for package 'Snowball' Formats: text html latex example SnowballStemmer text html latex example ** building package indices ... * DONE (Snowball) * Installing *source* package 'tm' ... ** libs gcc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/include -fpic -g -O2 -c lazyTmMap.c -o lazyTmMap.o gcc -std=gnu99 -shared -L/usr/local/lib -o tm.so lazyTmMap.o ** R ** data ** inst ** preparing package for lazy loading Loading required package: filehash filehash: Simple key-value database (2.0-1 2008-12-19) Loading required package: Matrix Loading required package: lattice Attaching package: 'Matrix' The following object(s) are masked from package:stats : xtabs The following object(s) are masked from package:base : colMeans, colSums, rcond, rowMeans, rowSums Loading required package: Snowball Loading required package: RWeka Loading required package: rJava Loading required package: grid Loading required package: XML Creating a new generic function for "ncol" in "tm" Creating a new generic function for "nrow" in "tm" Creating a new generic function for "colnames" in "tm" Creating a new generic function for "rownames" in "tm" Creating a new generic function for "sapply" in "tm" ** help >>> Building/Updating help pages for package 'tm' Formats: text html latex example CSVSource-class text html latex CSVSource text html latex DataframeSource-class text html latex DataframeSource text html latex example Dictionary-class text html latex Dictionary text html latex example DirSource-class text html latex DirSource text html latex DublinCore-methods text html latex example FunctionGenerator-class text html latex FunctionGenerator text html latex example GmaneSource-class text html latex GmaneSource text html latex IN-methods text html latex example MetaDataNode-class text html latex NewsgroupDocument-class text html latex PlainTextDocument-class text html latex RCV1Document-class text html latex Reuters21578Document-class text html latex ReutersSource-class text html latex ReutersSource text html latex Source-class text html latex StructuredTextDocument-class text html latex TermDocMatrix-class text html latex TermDocMatrix text html latex example TextDocCol-class text html latex TextDocCol text html latex example TextDocument-class text html latex TextRepository-class text html latex TextRepository text html latex example URISource-class text html latex URISource text html latex VectorSource-class text html latex VectorSource text html latex example WeightFunction-class text html latex WeightFunction text html latex example XMLTextDocument-class text html latex acq text html latex example activateCluster text html latex appendElem text html latex example appendMeta text html latex example asPlain text html latex example c-methods text html latex example colnames text html latex example completeStems text html latex example convertMboxEml text html latex example convertRCV1Plain text html latex example convertReut21578XMLPlain text html latex example crude text html latex example deactivateCluster text html latex dim text html latex example dimnames text html latex example dissimilarity-methods text html latex example eoi-methods text html latex findAssocs text html latex example findFreqTerms text html latex example getElem-methods text html latex getFilters text html latex example getReaders text html latex example getSources text html latex example getTransformations text html latex example inspect-methods text html latex example length-methods text html latex example loadDoc text html latex makeChunks text html latex example materialize text html latex example meta text html latex example ncol text html latex example nrow text html latex example plot text html latex example preprocessReut21578XML text html latex prescindMeta text html latex example readDOC text html latex readGmane text html latex readHTML text html latex example readNewsgroup text html latex readPDF text html latex example readPlain text html latex example readRCV1 text html latex readReut21578XML text html latex removeCitation text html latex removeMeta text html latex example removeMultipart text html latex removeNumbers text html latex example removePunctuation text html latex example removeSignature text html latex example removeSparseTerms text html latex example removeWords text html latex example replacePatterns text html latex example rownames text html latex example sFilter text html latex example searchFullText text html latex example show-methods text html latex example stemDoc text html latex example stepNext-methods text html latex stopwords text html latex example stripWhitespace text html latex example subset-methods text html latex example summary-methods text html latex example termFreq text html latex example tmFilter-methods text html latex example tmIndex-methods text html latex example tmIntersect text html latex example tmMap-methods text html latex example tmTolower text html latex example tmUpdate text html latex weightBin text html latex weightLogical text html latex weightTf text html latex weightTfIdf text html latex writeCorpus-methods text html latex example ** building package indices ... * DONE (tm) ダウンロードされたパッケージは、以下にあります /tmp/RtmpvjjRtI/downloaded_packages >